=> Bootstrap dependency digest>=20010302: found digest-20190127 ===> Skipping vulnerability checks. WARNING: No /var/db/pkg/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'. => Checksum SHA1 OK for itpp-4.0.7.tar.gz => Checksum RMD160 OK for itpp-4.0.7.tar.gz => Checksum SHA512 OK for itpp-4.0.7.tar.gz ===> Installing dependencies for itpp-4.0.7 => Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.6nb2 => Tool dependency gmake>=3.81: found gmake-4.2.1nb1 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency libtool-fortran>=2.4.2nb9: found libtool-fortran-2.4.6nb1 => Build dependency cwrappers>=20150314: found cwrappers-20180325 => Full dependency blas>=1.0nb3: found blas-3.9.0 => Full dependency fftw>=3.1nb1: found fftw-3.3.8nb2 => Full dependency lapack>=3.1.1: found lapack-3.9.0 => Full dependency gcc7>=: found gcc7-7.5.0nb2 => Full dependency gcc7>=7.0: found gcc7-7.5.0nb2 ===> Overriding tools for itpp-4.0.7 ===> Extracting for itpp-4.0.7 ===> Patching for itpp-4.0.7 => Applying pkgsrc patches for itpp-4.0.7 => Verifying /data/pkgsrc/math/itpp/patches/patch-configure => Applying pkgsrc patch /data/pkgsrc/math/itpp/patches/patch-configure Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-configure,v 1.2 2014/08/19 13:37:53 joerg Exp $ | |--- configure.orig 2009-12-27 00:56:31.000000000 +0000 |+++ configure -------------------------- Patching file configure using Plan A... Hunk #1 succeeded at 23433. Hunk #2 succeeded at 23494. done ===> Creating toolchain wrappers for itpp-4.0.7 ===> Configuring for itpp-4.0.7 => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Checking for portability problems in extracted files checking for a BSD-compatible install... /usr/bin/install -c -o pbulkXXX -g users checking whether build environment is sane... yes checking for a thread-safe mkdir -p... build-aux/install-sh -c -d checking for gawk... /usr/bin/awk checking whether make sets $(MAKE)... yes checking build system type... x86_64--netbsd checking host system type... x86_64--netbsd checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether clang++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of clang++... gcc3 checking how to run the C++ preprocessor... clang++ -E checking for x86_64--netbsd-g77... gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking for a BSD-compatible install... /usr/bin/install -c -o pbulkXXX -g users checking for x86_64--netbsd-gcc... clang checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking dependency style of clang... gcc3 checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... /usr/bin/grep -F checking for ld used by clang... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking for /usr/bin/ld option to reload object files... -r checking for x86_64--netbsd-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... match_pattern /lib[^/]+(\.so|_pic\.a)$ checking for x86_64--netbsd-ar... no checking for ar... ar checking for x86_64--netbsd-strip... no checking for strip... strip checking for x86_64--netbsd-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from clang object... ok checking how to run the C preprocessor... clang -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether clang++ accepts -g... (cached) yes checking dependency style of clang++... (cached) gcc3 checking how to run the C++ preprocessor... clang++ -E checking for x86_64--netbsd-g77... (cached) gfortran checking whether we are using the GNU Fortran 77 compiler... (cached) yes checking whether gfortran accepts -g... (cached) yes checking for objdir... .libs checking if clang supports -fno-rtti -fno-exceptions... yes checking for clang option to produce PIC... -fPIC -DPIC checking if clang PIC flag -fPIC -DPIC works... yes checking if clang static flag -static works... yes checking if clang supports -c -o file.o... rm: conftest*: No such file or directory yes checking if clang supports -c -o file.o... (cached) yes checking whether the clang linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... rm: conftest*: No such file or directory no checking dynamic linker characteristics... NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for ld used by clang++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the clang++ linker (/usr/bin/ld) supports shared libraries... yes checking for clang++ option to produce PIC... -fPIC -DPIC checking if clang++ PIC flag -fPIC -DPIC works... yes checking if clang++ static flag -static works... yes checking if clang++ supports -c -o file.o... rm: conftest*: No such file or directory yes checking if clang++ supports -c -o file.o... (cached) yes checking whether the clang++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... rm: conftest*: No such file or directory yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... NetBSD ld.elf_so checking how to hardcode library paths into programs... immediate checking whether ln -s works... yes checking for a sed that does not truncate output... (cached) /usr/bin/sed checking whether to use explicit library dependencies... yes checking for doxygen... no checking for latex... no checking for dvips... no checking for gs... no checking for perl... /data/scratch/math/itpp/work/.tools/bin/perl checking for gdiff... /usr/bin/diff checking whether time.h and sys/time.h may both be included... yes checking cmath usability... yes checking cmath presence... yes checking for cmath... yes checking complex usability... yes checking complex presence... yes checking for complex... yes checking ieeefp.h usability... yes checking ieeefp.h presence... yes checking for ieeefp.h... yes checking whether signgam is declared... yes checking whether isfinite is declared... no checking whether isinf is declared... no checking whether isnan is declared... no checking for std::isfinite... yes checking for std::isinf... yes checking for std::isnan... yes checking for asinh... yes checking for acosh... yes checking for atanh... yes checking for cbrt... yes checking for erf... yes checking for erfc... yes checking for finite... yes checking for fpclass... no checking for isfinite... no checking for isinf... yes checking for isnan... yes checking for lgamma... yes checking for log1p... yes checking for log2... yes checking for rint... yes checking for tgamma... yes checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of unsigned long... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking whether the compiler supports extern template... yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -Wl,-R/usr/pkg/lib -L/data/scratch/math/itpp/work/.buildlink/lib -L/usr/pkg/gcc7/lib/gcc/x86_64--netbsd/7.5.0 -L/usr/pkg/gcc7/lib/gcc/x86_64--netbsd/7.5.0/../../.. -Wl,-R/usr/pkg/gcc7/x86_64--netbsd/lib/. -Wl,-R/usr/pkg/gcc7/lib/. -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for sgemm_ in -lmkl_core... no checking for dgemm_ in -lmkl_core... no checking for sgemm_ in -lacml... no checking for sgemm_ in -lacml_mp... no checking for dgemm_ in -lacml... no checking for dgemm_ in -lacml_mp... no checking for ATL_xerbla in -latlas... no checking for sgemm_ in -lblas... yes checking for MKLGetVersion in -lblas... no checking for acmlversion in -lblas... no checking for ATL_xerbla in -lblas... no checking for cheev_... no checking for cheev_ in -lmkl_lapack32... no checking for cheev_ in -lmkl_lapack... no checking for cheev_ in -llapack... yes checking for DftiComputeForward... no checking for zfft1dx... no checking for fftw_plan_dft_1d in -lfftw3... yes checking fftw3.h usability... yes checking fftw3.h presence... yes checking for fftw3.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating itpp/Makefile config.status: creating itpp/base/Makefile config.status: creating itpp/base/algebra/Makefile config.status: creating itpp/base/bessel/Makefile config.status: creating itpp/base/math/Makefile config.status: creating itpp/comm/Makefile config.status: creating itpp/fixed/Makefile config.status: creating itpp/optim/Makefile config.status: creating itpp/protocol/Makefile config.status: creating itpp/signal/Makefile config.status: creating itpp/srccode/Makefile config.status: creating itpp/stat/Makefile config.status: creating doc/Makefile config.status: creating doc/images/Makefile config.status: creating doc/tutorial/Makefile config.status: creating doc/tutorial/src/Makefile config.status: creating doc/local/Makefile config.status: creating doc/local/index.doc config.status: creating doc/doxygen_html.cfg config.status: creating extras/Makefile config.status: creating tests/Makefile config.status: creating win32/Makefile config.status: creating win32/itpp_acml_tests/Makefile config.status: creating win32/itpp_mkl_tests/Makefile config.status: creating itpp.pc config.status: creating itpp_debug.pc config.status: creating itpp-config config.status: creating itpp/config.h config.status: executing depfiles commands config.status: executing libtool commands rm: libtoolT: No such file or directory configure: displaying configuration summary ------------------------------------------------------------------------------ itpp-4.0.7 library configuration: ------------------------------------------------------------------------------ Directories: - prefix ......... : /usr/pkg - exec_prefix .... : ${prefix} - includedir ..... : ${prefix}/include - libdir ......... : ${exec_prefix}/lib - datarootdir .... : ${prefix}/share - docdir ......... : ${datarootdir}/doc/${PACKAGE_TARNAME} Switches: - debug .......... : no - exceptions ..... : no - html-doc ....... : no - shared ......... : yes - static ......... : no - explicit deps .. : yes - zdotu .......... : zdotusub Documentation tools: - doxygen ........ : no - latex .......... : no - dvips .......... : no - ghostscript .... : no Testing tools: - diff ........... : yes Optional modules: - comm ........... : yes - fixed .......... : yes - optim .......... : yes - protocol ....... : yes - signal ......... : yes - srccode ........ : yes External libs: - BLAS ........... : yes * MKL .......... : no * ACML ......... : no * ATLAS ........ : no - LAPACK ......... : yes - FFT ............ : yes * MKL .......... : no * ACML ......... : no * FFTW ......... : yes Compiler/linker flags/libs/defs: - CXX ............ : clang++ - F77 ............ : gfortran - CXXFLAGS ....... : -O2 -I/usr/pkg/include -I/usr/include - CXXFLAGS_DEBUG . : -Wall -ggdb -pipe - CPPFLAGS ....... : -I/usr/pkg/include -I/usr/include - LDFLAGS ........ : -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib - LIBS ........... : -lfftw3 -llapack -lblas ------------------------------------------------------------------------------ Now type 'make && make install' to build and install itpp-4.0.7 library ------------------------------------------------------------------------------ => Modifying libtool scripts to use pkgsrc libtool => Modifying libtool scripts to use pkgsrc depcomp