=> Bootstrap dependency digest>=20010302: found digest-20160304
===> Skipping vulnerability checks.
WARNING: No /var/db/pkg/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'.
===> Installing for py35-gdal-2.2.4
=> Generating pre-install file lists
=> Creating installation directories
env PYTHONPATH=/usr/pkg/lib/python3.5/site-packages${PYTHONPATH:+:$PYTHONPATH} \
	python setup.py install --root=/data/scratch/geography/py-gdal/work/.destdir --prefix=/usr/pkg
WARNING: "CXX=/bin/sh /data/scratch/geography/py-gdal/work/gdal-2.2.4/libtool --mode=compile --tag=CXX clang++ -std=gnu++11" was defined in the environment and contains more than one word. Unsetting it since that is incompatible of distutils
WARNING: "CC=/bin/sh /data/scratch/geography/py-gdal/work/gdal-2.2.4/libtool --mode=compile --tag=CC clang" was defined in the environment and contains more than one word. Unsetting it since that is incompatible of distutils
running install
running build
running build_py
running build_ext
running install_lib
creating /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib
creating /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5
creating /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages
copying build/lib.netbsd-8.99.14-amd64-3.5/gdal.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages
copying build/lib.netbsd-8.99.14-amd64-3.5/ogr.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages
copying build/lib.netbsd-8.99.14-amd64-3.5/osr.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages
copying build/lib.netbsd-8.99.14-amd64-3.5/gdalconst.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages
copying build/lib.netbsd-8.99.14-amd64-3.5/gnm.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages
copying build/lib.netbsd-8.99.14-amd64-3.5/gdalnumeric.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages
creating /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/gdalconst.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/gdal_array.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/gdalnumeric.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/osr.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/gnm.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/ogr.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/__init__.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/gdal.py -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/_gdal.so -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/_gdalconst.so -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/_osr.so -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/_ogr.so -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/_gnm.so -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
copying build/lib.netbsd-8.99.14-amd64-3.5/osgeo/_gdal_array.so -> /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/gdal.py to gdal.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/ogr.py to ogr.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osr.py to osr.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/gdalconst.py to gdalconst.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/gnm.py to gnm.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/gdalnumeric.py to gdalnumeric.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gdalconst.py to gdalconst.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gdal_array.py to gdal_array.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gdalnumeric.py to gdalnumeric.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/osr.py to osr.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gnm.py to gnm.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/ogr.py to ogr.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/__init__.py to __init__.cpython-35.pyc
byte-compiling /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gdal.py to gdal.cpython-35.pyc
running install_egg_info
running egg_info
creating GDAL.egg-info
writing dependency_links to GDAL.egg-info/dependency_links.txt
writing GDAL.egg-info/PKG-INFO
writing top-level names to GDAL.egg-info/top_level.txt
writing manifest file 'GDAL.egg-info/SOURCES.txt'
reading manifest file 'GDAL.egg-info/SOURCES.txt'
writing manifest file 'GDAL.egg-info/SOURCES.txt'
Copying GDAL.egg-info to /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/GDAL-2.2.4-py3.5.egg-info
running install_scripts
for f in `ls ./scripts/*.py` ; do /bin/sh /data/scratch/geography/py-gdal/work/gdal-2.2.4/libtool --mode=install /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c $f /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin ; done
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/epsg_tr.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/epsg_tr.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/esri2wkt.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/esri2wkt.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gcps2vec.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gcps2vec.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gcps2wld.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gcps2wld.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdal2tiles.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdal2tiles.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdal2xyz.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdal2xyz.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdal_auth.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdal_auth.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdal_calc.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdal_calc.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdal_edit.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdal_edit.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdal_fillnodata.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdal_fillnodata.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdal_merge.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdal_merge.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdal_pansharpen.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdal_pansharpen.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdal_polygonize.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdal_polygonize.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdal_proximity.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdal_proximity.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdal_retile.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdal_retile.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdal_sieve.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdal_sieve.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdalchksum.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdalchksum.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdalcompare.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdalcompare.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdalident.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdalident.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdalimport.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdalimport.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/gdalmove.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/gdalmove.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/mkgraticule.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/mkgraticule.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/ogrmerge.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/ogrmerge.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/pct2rgb.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/pct2rgb.py
libtool: install: /data/scratch/geography/py-gdal/work/gdal-2.2.4/install-sh -c ./scripts/rgb2pct.py /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/bin/rgb2pct.py
=> Automatic manual page handling
=> Generating post-install file lists
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/gdal.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/gdalconst.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/gdalnumeric.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/gnm.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/ogr.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/__init__.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gdal.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gdal_array.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gdalconst.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gdalnumeric.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gnm.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/ogr.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/osr.pyc'
pkg_create: can't stat `/data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osr.pyc'
=> Checking file-check results for py35-gdal-2.2.4
ERROR: ************************************************************
ERROR: The following files are in the PLIST but not in /data/scratch/geography/py-gdal/work/.destdir/usr/pkg:
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/gdal.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/gdalconst.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/gdalnumeric.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/gnm.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/ogr.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/__init__.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gdal.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gdal_array.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gdalconst.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gdalnumeric.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/gnm.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/ogr.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/osr.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osr.pyc
ERROR: ************************************************************
ERROR: The following files are in /data/scratch/geography/py-gdal/work/.destdir/usr/pkg but not in the PLIST:
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/__pycache__/gdal.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/__pycache__/gdalconst.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/__pycache__/gdalnumeric.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/__pycache__/gnm.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/__pycache__/ogr.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/__pycache__/osr.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/__pycache__/__init__.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/__pycache__/gdal.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/__pycache__/gdal_array.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/__pycache__/gdalconst.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/__pycache__/gdalnumeric.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/__pycache__/gnm.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/__pycache__/ogr.cpython-35.pyc
ERROR:         /data/scratch/geography/py-gdal/work/.destdir/usr/pkg/lib/python3.5/site-packages/osgeo/__pycache__/osr.cpython-35.pyc
*** Error code 1

Stop.
make[1]: stopped in /data/pkgsrc/geography/py-gdal
*** Error code 1

Stop.
make: stopped in /data/pkgsrc/geography/py-gdal